PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0362s0380.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 1205aa    MW: 138424 Da    PI: 5.5307
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0362s0380.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS203.11.7e-6273493374
                    GRAS   3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                             + L+ecA+a++ g l  a++lL+r++ las+++ ++++++++y +eAL +r ++        ++p   s      ++ +++l   + 
  SapurV1A.0362s0380.1.p   7 QKLMECAQAIEGGRLDDADSLLERIQSLASQEDsESTRKVVKYCAEALVRRAYG--------IRPLCPS---RLLTFLFDQLEDTCR 82 
                             79**************************9999989*******************........2222222...122334445555666 PP

                    GRAS  89 PilkfshltaNqaIleave.geervHiiDfdisqG.lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelg 173
                             P+++f+  t+   I +a++ g++r+HiiD++i+     W  +++ L  R +g  s+ iT v + + +s+e  +++g          +
  SapurV1A.0362s0380.1.p  83 PFFEFARTTTEDIIADALNpGDKRLHIIDLSIMSRiSRWTVFIDDLQGRHGGLQSVLITSVTP-KRSSEEGDRKVG----------D 158
                             ******************9455**********875269************************9.223333333333..........6 PP

                    GRAS 174 vpfefnvlvak.rledl.eleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                             v++e++ l+ +   + +  +++Lr k+ +E+++Vn+ + l +ll++++++e+    vL+ vk+l+++++v++eq a++ns+++ +r+
  SapurV1A.0362s0380.1.p 159 VDLEWRQLIYNsPADIVkCFSKLRRKRkDEMVVVNWGFILGKLLAQDGAIEQ----VLSKVKDLEADIMVISEQQANLNSPDLSNRL 241
                             8888888866635555534689999988***********************9....******************************* PP

                    GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                              ++l+yys++f+sle++     ++r +  + +++r+i nvvaceg +r+er e++ +W++rl++aGF+p+pl+         ll+  
  SapurV1A.0362s0380.1.p 242 EQSLQYYSTIFESLEQE-----DDRFMSRETYFRRQIGNVVACEGIDRVERIESFDQWQHRLSQAGFSPIPLQAAR--FNYNLLNAL 321
                             ***************99.....8999999999****************************************7543..345677777 PP

                    GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             +  gyr+e+++  + l W++ pL ++SaW+
  SapurV1A.0362s0380.1.p 322 E--GYRIEQKDVHIQLSWHGFPLAVASAWK 349
                             6..9*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.6771333IPR005202Transcription factor GRAS
PfamPF035145.9E-607349IPR005202Transcription factor GRAS
SMARTSM006144.4E-6613664IPR003656Zinc finger, BED-type
SuperFamilySSF530981.9E-517511175IPR012337Ribonuclease H-like domain
PfamPF143721.5E-199841082IPR025525hAT-like transposase, RNase-H fold
PfamPF056992.4E-1311281181IPR008906HAT, C-terminal dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1205 aa     Download sequence    Send to blast
MACILFQKLM ECAQAIEGGR LDDADSLLER IQSLASQEDS ESTRKVVKYC AEALVRRAYG  60
IRPLCPSRLL TFLFDQLEDT CRPFFEFART TTEDIIADAL NPGDKRLHII DLSIMSRISR  120
WTVFIDDLQG RHGGLQSVLI TSVTPKRSSE EGDRKVGDVD LEWRQLIYNS PADIVKCFSK  180
LRRKRKDEMV VVNWGFILGK LLAQDGAIEQ VLSKVKDLEA DIMVISEQQA NLNSPDLSNR  240
LEQSLQYYST IFESLEQEDD RFMSRETYFR RQIGNVVACE GIDRVERIES FDQWQHRLSQ  300
AGFSPIPLQA ARFNYNLLNA LEGYRIEQKD VHIQLSWHGF PLAVASAWKF TDPPQSSSGL  360
CVMQDRVDDS EETASSSESE DDEENDPCIM ADRNLWSTQG STMNRIAASA KLFDILEYLC  420
HLYKLPVAVT WISDNRGWNK RILCIDYSAC YTVMPSIHDF VGGHAHHRLE EGQGVAGKAL  480
QSNIHFQRVW RNRILRACFA IRLTSTHSCK DDYVVEFYLP EGMEETSERE LLVSEVLRTL  540
QENCLESWKV WVGELNEASG FRVGLDDERM SNIPHEALEQ DIQEQSAIAP PSLNFENALL  600
IVDGGLHSTN KRRKISSVWD KFDKNWGENG EVWATFKHCK NMYGAESKRG TSSLHKHLRK  660
CLPSRQDKAE QQPLIFETSD SSTSIIQRNS VKNQERSHLD IETMIINHGY PLDMVQHECF  720
EIFVKNLQPM FELHSKDVVE ANVLAICRQE KEKLIKYFES LSCLLSLILE LWSSNDRMMT  780
YCCLTVHFID DGWQLKKKIL AFRNLQYNYD MGTIHEFIKS VLAEWRINKN VRFILLDITP  840
PKEHMIGELR SKVSDITIHG HLFCVSSYAQ ILNLLVQDGL SEIRSLLYKI RECIEYVNGS  900
SLGRKMLQMA IRNGSLQDKE MPFQDVPARW DTTFLMLERS LEFREAFNHL EHLDCDFKVN  960
PSAEEWNKAS SICECLKEFH KSTSNFPTTL EGYFLSVRDV YKNLLKWEQS EHVYVRSIAN  1020
TMKGKFDEYW GEASLALGIS VVLNPSFKLE LVEYGYQQVY GIDASLHLSK FLGNVTGVYH  1080
KYAKDFGDQG PSSSAMVDKS LRPSSDISFE EWRKGRYERN MVQSQQNELD QYLEQPPEKL  1140
DKDGDVLAWW QQNAQKFPIL GKMARDFLAI PVSTAISKSS EVMKMTSVHE GLVFNMWEGL  1200
VGQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-2053494375GRAS family transcription factor containing p
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181186RRKRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041340.10.0PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X5
TrEMBLU5FQ360.0U5FQ36_POPTR; Uncharacterized protein
STRINGPOPTR_0016s02730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1556826
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.12e-57GRAS family protein